Uses of Class
kdl.prox.db.Container

Packages that use Container

kdl.prox.clustering
kdl.prox.db
kdl.prox.gui2
kdl.prox.model2.common.predictions
kdl.prox.model2.common.sources
kdl.prox.model2.rbc
kdl.prox.model2.rdn
kdl.prox.model2.rdn.modules.db
kdl.prox.model2.rdn.modules.init
kdl.prox.model2.rdn.modules.listeners
kdl.prox.model2.rdn.modules.statistic
kdl.prox.model2.rpt
kdl.prox.model2.rpt.modules.pruning
kdl.prox.model2.rpt.util
kdl.prox.model2.util
kdl.prox.qgraph2
kdl.prox.qgraph2.family
kdl.prox.qgraph2.util
kdl.prox.sample
kdl.prox.script
kdl.prox.util

Uses of Container in kdl.prox.clustering

Methods in kdl.prox.clustering that return Container

Container	Spectral.clusterContainerIntoSubgraphs(Container inputContainer, java.lang.String outputContName) Cluster a container into another
Container	Spectral.clusterContainerIntoSubgsWithClustObjs(Container container, java.lang.String outputContName, java.lang.String typeAttribute) Cluster and add a cluster object to each sub-graph

Methods in kdl.prox.clustering with parameters of type Container

Container	Spectral.clusterContainerIntoSubgraphs(Container inputContainer, java.lang.String outputContName) Cluster a container into another
Container	Spectral.clusterContainerIntoSubgsWithClustObjs(Container container, java.lang.String outputContName, java.lang.String typeAttribute) Cluster and add a cluster object to each sub-graph

Uses of Container in kdl.prox.db

Methods in kdl.prox.db that return Container

Container	Container.createChild(java.lang.String contName) Row-level method that adds a child to me with the specified name.
Container	Container.createChildFromTempSGINSTs(int containerID, java.lang.String containerName, NST objTempSGINST, NST linkTempSGINST) Creates a child container whose SGI object and link items are initialized with the ones passed in.
Container	Container.createChildFromTempSGINSTs(java.lang.String containerName, NST objTempSGINST, NST linkTempSGINST) Creates a child container whose SGI object and link items are initialized with the ones passed in.
static Container	DB.createNewTempContainer() Utility akin to File.createTempFile(), returns a new temporary container in a standard 'system' location.
Container	Container.getChild(java.lang.String contName) Gets the container with the specified name, which is a child of me
static Container	DB.getContainer(java.lang.String containerPath)
Container	Container.getParent() Returns a Container for my parent.
Container	Subgraph.getParentContainer() Returns the parent container
static Container	DB.getRootContainer()
static Container	DB.getTempParentContainer() Called by createNewTempContainer(), returns the temporary 'system' container that is to hold randomly-named child containers.

Methods in kdl.prox.db with parameters of type Container

int	Container.copySubgraphsFromContainer(Container origCont) Overload with no filter for IDs of subgraphs to be copied.
int	Container.copySubgraphsFromContainer(Container copyFromCont, NST subgraphIdsNST) Copies the specified set of subgraph from copyFromCont into me It recodes the original subg_ids so that they start from the current subg_id + 1 Copy involves two steps: copying objects/links and copying attributes.
void	Container.makeChildOf(Container parentContainer) Makes this container a child of another container.
static void	Container.mergeContainers(java.util.List inputContainersList, Container destContainer) Combines the contents of all input containers in the list and copiest them to the destination container.

Constructors in kdl.prox.db with parameters of type Container

Subgraph(Container container, int subgOID, java.lang.String objBATName, java.lang.String linkBATName)

Uses of Container in kdl.prox.gui2

Methods in kdl.prox.gui2 that return Container

Container

ProxURL.getContainer(boolean isIgnoreLastComponent) NB: applies only to 'cont' protocol.

Methods in kdl.prox.gui2 with parameters of type Container

static java.lang.String[]

GUIContentGenerator.getUniqueNamesInContainer(Container container)

Constructors in kdl.prox.gui2 with parameters of type Container

RunQueryImpl(java.lang.Object queryFileOrEle, Container inputContainer, java.lang.String outputContainerName)

Uses of Container in kdl.prox.model2.common.predictions

Methods in kdl.prox.model2.common.predictions with parameters of type Container

Predictions

Predictions.setTrueLabels(Container cont, AttributeSource trueClass) Sets the true labels for an entire container

Uses of Container in kdl.prox.model2.common.sources

Methods in kdl.prox.model2.common.sources with parameters of type Container

protected NST	AttributeSource.computeAttributeTable(Container container, NSTCache cache, java.lang.String colList) Extracted, to make it easy to extend this class
protected NST	TemporalItemSource.computeSourceTable(Container cont, NSTCache cache)
protected NST	TemporalAttributeSource.computeSourceTable(Container cont, NSTCache cache)
protected abstract NST	Source.computeSourceTable(Container cont, NSTCache cache) This is the main method.
protected NST	ItemSource.computeSourceTable(Container container, NSTCache cache) Returns the [subg_id, value] table.
protected NST	AttributeSource.computeSourceTable(Container container, NSTCache cache) Returns the [subg_id, colList] table for this source.
protected NST	ItemSource.computeSourceTable(Container container, NSTCache cache, java.lang.String colList)
Source	Source.init(Container cont, NSTCache cache) Passes in the container, and initializes all the tables it needs

Uses of Container in kdl.prox.model2.rbc

Methods in kdl.prox.model2.rbc with parameters of type Container

Predictions	RBC.apply(Container testCont) Uses the learned Conditional Probability Distributions to estimate values for the class label of unseen subgraps
RBC	RBC.learn(Container trainCont, AttributeSource label, java.util.List<AttributeSource> sources)
RBC	RBC.learn(Container trainCont, AttributeSource label, org.python.core.PyList sources) Computes the Conditional Probability Distributions from the data

Uses of Container in kdl.prox.model2.rdn

Method parameters in kdl.prox.model2.rdn with type arguments of type Container

java.util.Map<RPT,Predictions>	RDN.apply(java.util.Map<RPT,Container> modelsToTestConts, int maxIterations) Apply the RDN to a set of containers one for each class label.
void	RPTTableCacher.startup(java.util.Map<RPT,Container> modelsConts)
void	RPTAttrNameMapper.startup(java.util.Map<RPT,Container> modelsConts)

Uses of Container in kdl.prox.model2.rdn.modules.db

Method parameters in kdl.prox.model2.rdn.modules.db with type arguments of type Container

void	RDNDBModule.startup(java.util.Map<RPT,Container> modelsConts)
void	DefaultDBModule.startup(java.util.Map<RPT,Container> modelsConts)

Uses of Container in kdl.prox.model2.rdn.modules.init

Method parameters in kdl.prox.model2.rdn.modules.init with type arguments of type Container

void	RDNInitModule.startup(java.util.Map<RPT,Container> modelsConts)
void	InitFromRPTPredictionsModule.startup(java.util.Map<RPT,Container> modelsConts)
void	DefaultInitModule.startup(java.util.Map<RPT,Container> modelsConts)

Uses of Container in kdl.prox.model2.rdn.modules.listeners

Method parameters in kdl.prox.model2.rdn.modules.listeners with type arguments of type Container

void	RDNListenerModule.startup(java.util.Map<RPT,Container> modelsConts)
void	LoggingListener.startup(java.util.Map<RPT,Container> modelsConts)
void	AttrSavingListener.startup(java.util.Map<RPT,Container> modelsConts)

Uses of Container in kdl.prox.model2.rdn.modules.statistic

Method parameters in kdl.prox.model2.rdn.modules.statistic with type arguments of type Container

void	RDNStatisticModule.startup(java.util.Map<RPT,Container> modelsToConts)
void	DefaultStatisticModule.startup(java.util.Map<RPT,Container> modelsToConts) Initialize empty set of predictions for each NST

Uses of Container in kdl.prox.model2.rpt

Fields in kdl.prox.model2.rpt declared as Container

Container

RPTState.trainContainer

Methods in kdl.prox.model2.rpt with parameters of type Container

Predictions	RPT.apply(Container testContainer) Apply the learned RPT to a container.
Predictions	RPT.apply(Container testContainer, NSTCache nstCache)
RPT	RPT.learn(Container trainContainer, AttributeSource label, java.util.List<Source> sources) Learn the model of the classLabel from a train container and a set of sources.
RPT	RPT.learn(Container trainContainer, AttributeSource label, org.python.core.PyList sources)
RPT	RPT.learn(Container trainContainer, AttributeSource label, Source[] sources)

Uses of Container in kdl.prox.model2.rpt.modules.pruning

Constructors in kdl.prox.model2.rpt.modules.pruning with parameters of type Container

CostComplexityPruning(Container testContainer)
This is the constructor to use testSample tree selection.

TestSampleSelection(Container container)

Uses of Container in kdl.prox.model2.rpt.util

Methods in kdl.prox.model2.rpt.util with parameters of type Container

static java.util.List<FeatureSetting>	FSGenerationUtil.createFSTables(Container cont, java.util.List<FeatureSetting> fsList, RPTState rptState) Used by RPT.apply: creates tables for a list of already established FeatureSettings NOTE: Remember to clear the nstCache before calling it --unless you intend to re-use old tables.
static java.util.List<FeatureSetting>	FSGenerationUtil.createFSTables(Container cont, Source[] sourceList, RPTState rptState)
static java.util.List<FeatureSetting>	FSGenerationUtil.createFSTables(Container cont, Source[] sourceList, RPTState rptState, java.util.List<java.lang.String> validAggregatorNamesList, java.util.List<java.lang.String> invalidAggregatorNamesForCore) Used by RPT.learn: Creates all the possible Feature Settings from the sources and the validAggregatorNamesList

Uses of Container in kdl.prox.model2.util

Methods in kdl.prox.model2.util with parameters of type Container

static NST	Correlation.getAllPairs(Container cont, java.lang.String objName1, java.lang.String attrName1, java.lang.String objName2, java.lang.String attrName2)
static NST	Correlation.getAllPairs(Container cont, java.lang.String objName1, java.lang.String attrName1, java.lang.String objName2, java.lang.String attrName2, int numSample)

Uses of Container in kdl.prox.qgraph2

Methods in kdl.prox.qgraph2 that return Container

Container

QueryGraph2CompOp.execTGPath(TGPath tgPath, java.util.Map cachedItems, Container sourceContainer, java.lang.String destContainerName) Step 4/4 called from constructor, executes the TGPath by generating and executing MIL corresponding to each TGEdge.

Methods in kdl.prox.qgraph2 with parameters of type Container

protected void	QueryGraph2CompOp.createLinks(Container outputContainer, java.util.List addLinksList) Creates update edges after the query is run
Container	QueryGraph2CompOp.execTGPath(TGPath tgPath, java.util.Map cachedItems, Container sourceContainer, java.lang.String destContainerName) Step 4/4 called from constructor, executes the TGPath by generating and executing MIL corresponding to each TGEdge.
static QueryGraph2CompOp	QueryGraph2CompOp.queryGraph(org.jdom.Element graphQueryEle, Container inputContainer, java.lang.String outputContainerName, boolean isExecute) Top-level entry point that runs the query specified in the XML file, saving the results into collection.

Constructors in kdl.prox.qgraph2 with parameters of type Container

QueryGraph2CompOp(org.jdom.Element graphQueryEle, Container inputContainer, java.lang.String outputContainer)
Four-arg executing overload, runs all steps (1-4) of the processing, including choosing a path and calling execTGPath() on it.

Uses of Container in kdl.prox.qgraph2.family

Constructors in kdl.prox.qgraph2.family with parameters of type Container

QueryResultsValidator(Container resultCont, java.io.File matFile)

Uses of Container in kdl.prox.qgraph2.util

Constructors in kdl.prox.qgraph2.util with parameters of type Container

QGUtil(Container sourceContainer)

Uses of Container in kdl.prox.sample

Constructors in kdl.prox.sample with parameters of type Container

SampleContainer(Container container, int numFolds, java.lang.String childContainerName)

SnowballSampler(Container container, int numFolds, java.lang.String sampleContainerName, java.lang.String coreItemName)
Samples the graph represented by the container by starting with random objects and 'snowballing' out to add all related objects.

Uses of Container in kdl.prox.script

Fields in kdl.prox.script declared as Container

Container

Proximity.rootContainer

Methods in kdl.prox.script that return Container

static Container	SNA.computeConnectedComponents(Container inputContainer, java.lang.String outputContainerName)
Container	Proximity.getContainer(java.lang.String containerPath) Utility that allows you to easily get a container with syntax like:

Methods in kdl.prox.script with parameters of type Container

void	AddAttribute.addAttribute(Container container, boolean isObject, java.lang.String newAttrName, java.lang.String attrFunction) Overload of addAttribute to function only on objects or links in a container.
void	Proximity.addBetweennessCentralityAttribute(java.lang.String newAttrName, boolean isUndirected, Container inputContainer) Implements the betweenness centrality algorithm for unweighted graphs, as described in "A Faster Algorithm for Betweenness Centrality", U.
void	Proximity.addClusterCoeffAttribute(java.lang.String newAttrName, Container inputContainer) Creates a new dbl attribute that contains clustering coefficients for items in the collection or the entire database.
void	Proximity.addConstantAttribute(Container container, boolean isObject, java.lang.String itemName, java.lang.String newAttrName, java.lang.Object newAttrValue) Creates a new constant attribute for items in the collection.
void	AddAttribute.addConstantAttribute(Container container, boolean isObject, java.lang.String itemName, java.lang.String newAttrName, java.lang.Object newAttrValue) Adds a new attribute to all items named by the ModelItem.
void	AddAttribute.addConstantSubgraphAttribute(Container container, java.lang.String newAttrName, java.lang.Object newAttrValue) Adds a new attribute to all subgraphs in the container.
void	Proximity.addHubsAndAuthoritiesAttributes(int numIterations, java.lang.String hubAttrName, java.lang.String authAttrName, Container inputContainer) Implements the iterative version of the hubs and authorities algorithm, as described in "Authoritative sources in a hyperlinked environment", J.
void	Proximity.addRandomAttribute(Container container, boolean isObject, java.lang.String itemName, java.lang.String newAttrName) Creates a new random attribute for items in the collection.
void	AddAttribute.addRandomAttribute(Container container, boolean isObject, java.lang.String itemName, java.lang.String newAttrName) Adds a new attribute (or appends values if the attribute exists) to all items named by the ModelItem.
void	AddAttribute.addRandomBinaryAttribute(Container container, boolean isObject, java.lang.String itemName, java.lang.String newAttrName)
void	AddAttribute.addRandomBinaryAttributeWithPrior(Container container, boolean isObject, java.lang.String itemName, java.lang.String newAttrName, double pOnes) Adds a new attribute (or appends values if the attribute exists) to all items named by the ModelItem.
static void	SNA.computeBetweennessCentrality(Container inputContainer, java.lang.String outputAttrName, boolean isUndirected) Implements the betweenness centrality algorithm for unweighted graphs, as described in "A Faster Algorithm for Betweenness Centrality", U.
static void	SNA.computeClusteringCoefficient(Container inputContainer, java.lang.String outputAttrName) Calculates the clustering coefficient for objects either in a container or in the entire db.
static Container	SNA.computeConnectedComponents(Container inputContainer, java.lang.String outputContainerName)
void	Proximity.computeConnectedComponents(java.lang.String outputContainerName, Container inputContainer) Creates a new container (child of root) where each subgraph is a connected component in the inputContainer.
static void	SNA.computeHubsAndAuthorities(Container inputContainer, int numIterations, java.lang.String hubAttrName, java.lang.String authAttrName)
void	Proximity.copyAttrFromItem(Container container, boolean isFromItemObject, java.lang.String fromItemName, java.lang.String fromAttrName, boolean isToItemObject, java.lang.String toItemName, java.lang.String toAttrName) Copy an attribute value from one item within a subgraph to another
void	AddAttribute.copyAttrFromItem(Container container, boolean isFromItemObject, java.lang.String fromItemName, java.lang.String fromAttrName, boolean isToItemObject, java.lang.String toItemName, java.lang.String toAttrName) Copies an attribute from one item within a subgraph to another.
void	Proximity.copyAttrFromItemToSubgraph(Container container, boolean isObject, java.lang.String itemName, java.lang.String attrName, java.lang.String newSubgAttrName) Copy an attribute value from one item within a subgraph to the subgraph itself
void	AddAttribute.copyAttrFromItemToSubgraph(Container container, boolean isObject, java.lang.String itemName, java.lang.String attrName, java.lang.String newSubgAttrName)
void	Proximity.copyAttrFromSubgraph(Container container, java.lang.String fromAttrName, boolean toIsObject, java.lang.String toItem, java.lang.String toAttrName) Copy a subgraph attribute to one of the items within that subgraph
void	AddAttribute.copyAttrFromSubgraphToItem(Container container, java.lang.String fromAttrName, boolean toIsObject, java.lang.String toItem, java.lang.String toAttrName)
void	Proximity.mergeContainers(org.python.core.PyList inputContainers, Container destContainer) Combines the contents of all input containers in the list and copiest them to the destination container.
void	Proximity.queryGraph(java.lang.String queryFileName, java.lang.String outputContainerName, Container inputContainer) Module that runs the query specified in the XML file, saving the results into outputContainerName.
static void	ShrinkDB.shrinkDB(Container keepContainer) Treats keepContainer as a view of the database (i.e., only considers its object and link IDs) and uses it to delete objects, links, and attribute values that are not in the database.

Uses of Container in kdl.prox.util

Constructors in kdl.prox.util with parameters of type Container

PopulateDB.ContainerContentsLineParser(Container container)

PopulateDB.SubgraphAttributeDefLineParser(Container container)

PopulateDB.SubgraphLineParser(Container container, int subgID)